PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G152600.1
Common NameB456_002G152600, LOC105785411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 336aa    MW: 38313.9 Da    PI: 7.4293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G152600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05257279123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Gorai.002G152600.1 257 FMCRKCGKAFAVRGDWRTHEKNC 279
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-5169196No hitNo description
SMARTSM003550.38173195IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-6173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.097173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-6239277No hitNo description
Gene3DG3DSA:3.30.160.608.7E-6244277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549257277IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADNHYSNFF SGWFKFNPLD QHYPSPIHPL QKPNPHPQNS HKNGTNNLNP FLHYRTTYSS  60
PPPSPPVREA LPLLSLSPTR HYKDEDGVYQ DQDQEQHSCT AMDVNGEDDD ETVTVTVALH  120
IGLPSASASE LASVLSASSE MTEQDDEYPI NRLKKRQYWI PTPSQILIGP SQFSCPVCCK  180
TFNRYNNMQM HMWAHGSQYR KGTESLRGTQ PTAMLRLPCY CCAPGCRNNI DHPRPKPLKD  240
FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH  300
IKAFGDGHQV YATDDLEEDD DEPASEVEQH NGSLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5790961e-168JX579096.1 Gossypium hirsutum clone NBRI_GE11269 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466946.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2Q7160.0A0A0D2Q716_G
STRINGVIT_08s0007g08070.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]